Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891171.1_cds_XP_016445896.1_40808
CDS Infomation

[gene=LOC107771085] [db_xref=GeneID:107771085] [protein=probable pectate lyase P59 isoform X2] [protein_id=XP_016445896.1] [location=complement(join(25095..25322,25971..26562,29693..30012))] [gbkey=CDS]
Sequence

ATGAAGGAACTAAGGCAAGTGACAGTTAGCAATAGCACAAGGAGGGGTCTAGGGACCAAA
AAGTACAAGGGACCTTGCATGGTCACAAATCCAATTGATAGGTGCTGGAGATGTGACCCT
AATTGGGCTGACAATAGGAAAAGGCTAGCTGATTGTGCAATGGGTTTTGGATACAAGGCC
ACCGGTGGGAAGGATGGCGAAATCTACATCGTCACCGACAATTCAGACGATTATGCTGAA
CCAAAACCTGGAACTCTCCGTTATGCCGTTATCCAAAAGGAGCCATTGTGGATCATATTC
GAAAGAAGTATGACCATCAGGTTACACCAGGAGATGATCATGCAGAGTGACAAGACCATC
GATGCTCGTGGGGCTAATGTTCACATTGCTAAAGGCGCTGGCATTACCCTCCAGTACATC
AAGAACGTGATCATCCACGGACTCCATATTCATGACATTGTCGAAGGAAGTGGTGGGATG
GTTCGTGATGCAGTGGACCATATTGGCATACGTACCGTTAGTGATGGAGATGGAATTTCT
ATTTTTGGTGCGTCCAATATATGGATTGATCATGTCTCTATGAAGAAATGCTATGACGGA
ATCATAGACGCTGTAGAAGGATCAACTGGTATCACTATATCCAATGGACATTTCACTGAC
CATAATGAGGTGATGTTGTTTGGTGCAAGTGACAGTTCTTCAATAGATCAAGTTATGCAA
ATCACATTAGCTTTCAATCATTTTGGGAAGAGATTGGTGCAGAGAATGCCAAGGTGCCGA
TGGGGATATATTCATGTTGTTAACAATGACTATACTCACTGGAATATGTATGCCATTGGG
GGTAGTATGCATCCAACTATCATTACCCAGGGTAATCGTTTTATTGCTCCTCCTGACATC
TTCAAGAAACAGGTAACAAAGAGGGAGTACAACCCAGAAGAAGTGTGGAAGCAGTGGACA
TGGAGATCAGAGGGAAATCTATTCATGAATGGAGCATACTTCATTGAATCTGGTGATCCA
GATTGGTCCAAGAAACACAAAGAGCTTTATGATGGAATATCAGCTGCCTCAGCTGAAGAA
GTTACTTGGATAACTAGATTTGCAGGTGCACTTGGTTGCAAAGAAGGAAAGGCTTGTTAA

Peptide Sequence

PEP ID

XP_016445896.1
PEP Infomation

PREDICTED: probable pectate lyase P59 isoform X2 [Nicotiana tabacum]
Sequence

MKELRQVTVSNSTRRGLGTKKYKGPCMVTNPIDRCWRCDPNWADNRKRLADCAMGFGYKA
TGGKDGEIYIVTDNSDDYAEPKPGTLRYAVIQKEPLWIIFERSMTIRLHQEMIMQSDKTI
DARGANVHIAKGAGITLQYIKNVIIHGLHIHDIVEGSGGMVRDAVDHIGIRTVSDGDGIS
IFGASNIWIDHVSMKKCYDGIIDAVEGSTGITISNGHFTDHNEVMLFGASDSSSIDQVMQ
ITLAFNHFGKRLVQRMPRCRWGYIHVVNNDYTHWNMYAIGGSMHPTIITQGNRFIAPPDI
FKKQVTKREYNPEEVWKQWTWRSEGNLFMNGAYFIESGDPDWSKKHKELYDGISAASAEE
VTWITRFAGALGCKEGKAC

Transcript Sequence

Gene sequence data has not been registered.